IL_4V4A_095

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

4V4A|1|B0|C|1152, 4V4A|1|B0|A|1154

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_095 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.3935

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4V4A|1|B0|C|1029
4V4A|1|B0|U|1030
4V4A|1|B0|C|1031
4V4A|1|B0|A|1032
4V4A|1|B0|G|1033
4V4A|1|B0|U|1034
4V4A|1|B0|G|1035
*
4V4A|1|B0|C|1150
4V4A|1|B0|U|1151
4V4A|1|B0|C|1152
4V4A|1|B0|A|1153
4V4A|1|B0|A|1154
4V4A|1|B0|G|1155

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BE

50S ribosomal protein L6

Chain BH

50S ribosomal protein L13