3D structure

PDB id
4V4A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
9.5 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4A_121 not in the Motif Atlas
Geometric match to IL_7A0S_023
Geometric discrepancy: 0.3675
The information below is about IL_7A0S_023
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_74641.1
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
32

Unit IDs

4V4A|1|B0|G|1683
4V4A|1|B0|G|1684
4V4A|1|B0|A|1685
4V4A|1|B0|A|1686
*
4V4A|1|B0|U|1976
4V4A|1|B0|C|1977

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BB
50S ribosomal protein L3
Chain BI
50S ribosomal protein L14

Coloring options:


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