IL_4V4A_121

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_121 not in the Motif Atlas

Geometric match to IL_7A0S_023

Geometric discrepancy: 0.3675

The information below is about IL_7A0S_023

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V4A|1|B0|G|1683
4V4A|1|B0|G|1684
4V4A|1|B0|A|1685
4V4A|1|B0|A|1686
*
4V4A|1|B0|U|1976
4V4A|1|B0|C|1977

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14