IL_4V4A_123

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

4V4A|1|B0|G|1716

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_123 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.2906

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V4A|1|B0|C|1703
4V4A|1|B0|G|1704
4V4A|1|B0|U|1705
4V4A|1|B0|A|1706
4V4A|1|B0|A|1707
4V4A|1|B0|C|1708
*
4V4A|1|B0|G|1713
4V4A|1|B0|A|1714
4V4A|1|B0|A|1715
4V4A|1|B0|G|1716
4V4A|1|B0|A|1717
4V4A|1|B0|A|1718
4V4A|1|B0|G|1719

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

50S ribosomal protein L2