IL_4V4A_125

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V4A|1|B0|G|1790, 4V4A|1|B0|C|1792, 4V4A|1|B0|C|1808, 4V4A|1|B0|U|1812

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_125 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.3343

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V4A|1|B0|U|1789
4V4A|1|B0|G|1790
4V4A|1|B0|C|1791
4V4A|1|B0|C|1792
4V4A|1|B0|A|1793
4V4A|1|B0|A|1794
4V4A|1|B0|C|1795
*
4V4A|1|B0|G|1805
4V4A|1|B0|G|1806
4V4A|1|B0|A|1807
4V4A|1|B0|C|1808
4V4A|1|B0|G|1809
4V4A|1|B0|U|1810
4V4A|1|B0|A|1811
4V4A|1|B0|U|1812
4V4A|1|B0|A|1813

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

50S ribosomal protein L2