IL_4V4A_130

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_130 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2911

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4A|1|B0|U|1848
4V4A|1|B0|G|1849
4V4A|1|B0|G|1850
4V4A|1|B0|A|1851
4V4A|1|B0|G|1852
*
4V4A|1|B0|C|1865
4V4A|1|B0|G|1866
4V4A|1|B0|A|1867
4V4A|1|B0|A|1868
4V4A|1|B0|A|1869

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BY

50S ribosomal protein L31