IL_4V4A_140

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

4V4A|1|B0|A|2381

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_140 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2429

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V4A|1|B0|G|2379
4V4A|1|B0|U|2380
4V4A|1|B0|A|2381
4V4A|1|B0|C|2382
*
4V4A|1|B0|G|2393
4V4A|1|B0|G|2394
4V4A|1|B0|C|2395

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BJ

50S ribosomal protein L15