IL_4V4A_159

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

4V4A|1|B0|C|2842

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_159 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3084

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

4V4A|1|B0|U|2822
4V4A|1|B0|G|2823
4V4A|1|B0|C|2824
4V4A|1|B0|A|2825
4V4A|1|B0|C|2826
4V4A|1|B0|G|2827
*
4V4A|1|B0|U|2840
4V4A|1|B0|U|2841
4V4A|1|B0|C|2842
4V4A|1|B0|A|2843
4V4A|1|B0|G|2844

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19