IL_4V4A_182

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUGAGG*CGCAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_182 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.266

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V4A|1|B0|G|1369
4V4A|1|B0|U|1370
4V4A|1|B0|G|1371
4V4A|1|B0|A|1372
4V4A|1|B0|G|1373
4V4A|1|B0|G|1374
*
4V4A|1|B0|C|1383
4V4A|1|B0|G|1384
4V4A|1|B0|C|1385
4V4A|1|B0|A|1386
4V4A|1|B0|G|1387
4V4A|1|B0|C|1388

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BA

50S ribosomal protein L2

Chain BY

50S ribosomal protein L31