3D structure

PDB id
4V4A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
9.5 Å

Loop

Sequence
GGAACUUUG*CUGUC
Length
14 nucleotides
Bulged bases
4V4A|1|B0|G|1975
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4A_186 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.3214
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4V4A|1|B0|G|1683
4V4A|1|B0|G|1684
4V4A|1|B0|A|1685
4V4A|1|B0|A|1686
4V4A|1|B0|C|1687
4V4A|1|B0|U|1688
4V4A|1|B0|U|1689
4V4A|1|B0|U|1690
4V4A|1|B0|G|1691
*
4V4A|1|B0|C|1973
4V4A|1|B0|U|1974
4V4A|1|B0|G|1975
4V4A|1|B0|U|1976
4V4A|1|B0|C|1977

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BB
50S ribosomal protein L3
Chain BI
50S ribosomal protein L14

Coloring options:


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