IL_4V4G_034

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

4V4G|1|AA|C|934, 4V4G|1|AA|U|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_034 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.5224

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V4G|1|AA|G|933
4V4G|1|AA|C|934
4V4G|1|AA|A|935
4V4G|1|AA|C|936
*
4V4G|1|AA|G|1379
4V4G|1|AA|U|1380
4V4G|1|AA|U|1381
4V4G|1|AA|C|1382
4V4G|1|AA|C|1383
4V4G|1|AA|C|1384

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain Aa

protein Y