IL_4V4G_119

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

4V4G|1|BB|U|2632, 4V4G|1|BB|G|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_119 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.4803

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V4G|1|BB|C|2631
4V4G|1|BB|U|2632
4V4G|1|BB|A|2633
4V4G|1|BB|G|2634
4V4G|1|BB|U|2635
4V4G|1|BB|A|2636
4V4G|1|BB|C|2637
*
4V4G|1|BB|G|2642
4V4G|1|BB|G|2643
4V4G|1|BB|A|2644
4V4G|1|BB|C|2645
4V4G|1|BB|C|2646
4V4G|1|BB|G|2647

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L14