IL_4V4G_247

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V4G|1|DB|U|2668, 4V4G|1|DB|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_247 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.4213

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V4G|1|DB|U|2666
4V4G|1|DB|C|2667
4V4G|1|DB|U|2668
4V4G|1|DB|C|2669
4V4G|1|DB|C|2670
*
4V4G|1|DB|G|2698
4V4G|1|DB|G|2699
4V4G|1|DB|U|2700
4V4G|1|DB|A|2701
4V4G|1|DB|G|2702

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DO

50S ribosomal protein L17

Chain DQ

50S ribosomal protein L19