IL_4V4G_248

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CU*ACAUG

Length

7 nucleotides

Bulged bases

4V4G|1|DB|C|2691, 4V4G|1|DB|A|2692, 4V4G|1|DB|U|2693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_248 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2427

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V4G|1|DB|C|2674
4V4G|1|DB|U|2675
*
4V4G|1|DB|A|2690
4V4G|1|DB|C|2691
4V4G|1|DB|A|2692
4V4G|1|DB|U|2693
4V4G|1|DB|G|2694

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DO

50S ribosomal protein L17