IL_4V4G_287

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGUGC*GCCC

Length

9 nucleotides

Bulged bases

4V4G|1|EA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_287 not in the Motif Atlas

Geometric match to IL_8C3A_479

Geometric discrepancy: 0.3214

The information below is about IL_8C3A_479

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

4V4G|1|EA|G|1047
4V4G|1|EA|G|1048
4V4G|1|EA|U|1049
4V4G|1|EA|G|1050
4V4G|1|EA|C|1051
*
4V4G|1|EA|G|1207
4V4G|1|EA|C|1208
4V4G|1|EA|C|1209
4V4G|1|EA|C|1210

Current chains

Chain EA

16S ribosomal RNA

Nearby chains

Chain EC

30S ribosomal protein S3

Chain EN

30S ribosomal protein S14

Chain Ea

protein Y