IL_4V4G_333

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_333 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.4589

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V4G|1|FB|U|1015
4V4G|1|FB|C|1016
4V4G|1|FB|C|1017
4V4G|1|FB|C|1018
4V4G|1|FB|U|1019
4V4G|1|FB|A|1020
4V4G|1|FB|A|1021
4V4G|1|FB|A|1022
*
4V4G|1|FB|U|1161
4V4G|1|FB|A|1162

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain FK

50S ribosomal protein L13

Chain FR

50S ribosomal protein L20