IL_4V4G_340

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

4V4G|1|FB|G|1333, 4V4G|1|FB|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_340 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.5618

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V4G|1|FB|G|1332
4V4G|1|FB|G|1333
4V4G|1|FB|A|1334
4V4G|1|FB|A|1335
4V4G|1|FB|G|1336
*
4V4G|1|FB|C|1344
4V4G|1|FB|G|1345
4V4G|1|FB|C|1346

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain FT

50S ribosomal protein L22