IL_4V4G_431

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

4V4G|1|HA|U|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_431 not in the Motif Atlas

Homologous match to IL_8C3A_145

Geometric discrepancy: 0.5988

The information below is about IL_8C3A_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V4G|1|HA|C|32
4V4G|1|HA|C|33
*
4V4G|1|HA|G|53
4V4G|1|HA|U|54
4V4G|1|HA|C|55
4V4G|1|HA|G|56

Current chains

Chain HA

5S RIBOSOMAL RNA

Nearby chains

Chain HG

50S ribosomal protein L5

Chain HP

50S ribosomal protein L18