IL_4V4G_445

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUCG*CUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_445 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3384

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V4G|1|HB|C|684
4V4G|1|HB|U|685
4V4G|1|HB|C|686
4V4G|1|HB|G|687
*
4V4G|1|HB|C|819
4V4G|1|HB|U|820
4V4G|1|HB|A|821
4V4G|1|HB|G|822

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HF

50S ribosomal protein L4

Chain HM

50S ribosomal protein L15