IL_4V4G_484

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UCUG*UUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_484 not in the Motif Atlas

Geometric match to IL_8C3A_135

Geometric discrepancy: 0.2871

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V4G|1|HB|U|2067
4V4G|1|HB|C|2068
4V4G|1|HB|U|2069
4V4G|1|HB|G|2070
*
4V4G|1|HB|U|2211
4V4G|1|HB|U|2212
4V4G|1|HB|G|2213
4V4G|1|HB|G|2214

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H1

50S ribosomal protein L31

Chain HD

50S ribosomal protein L2