3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
4V4G|1|IA|G|890
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4G_533 not in the Motif Atlas
Homologous match to IL_6CZR_364
Geometric discrepancy: 0.3123
The information below is about IL_6CZR_364
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

4V4G|1|IA|G|887
4V4G|1|IA|G|888
4V4G|1|IA|A|889
4V4G|1|IA|G|890
4V4G|1|IA|U|891
4V4G|1|IA|A|892
4V4G|1|IA|C|893
4V4G|1|IA|G|894
*
4V4G|1|IA|U|905
4V4G|1|IA|G|906
4V4G|1|IA|A|907
4V4G|1|IA|A|908
4V4G|1|IA|A|909
4V4G|1|IA|C|910

Current chains

Chain IA
16S ribosomal RNA

Nearby chains

Chain IL
30S ribosomal protein S12
Chain JB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6529 s