IL_4V4G_533

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

4V4G|1|IA|G|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_533 not in the Motif Atlas

Homologous match to IL_6CZR_364

Geometric discrepancy: 0.3123

The information below is about IL_6CZR_364

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4G|1|IA|G|887
4V4G|1|IA|G|888
4V4G|1|IA|A|889
4V4G|1|IA|G|890
4V4G|1|IA|U|891
4V4G|1|IA|A|892
4V4G|1|IA|C|893
4V4G|1|IA|G|894
*
4V4G|1|IA|U|905
4V4G|1|IA|G|906
4V4G|1|IA|A|907
4V4G|1|IA|A|908
4V4G|1|IA|A|909
4V4G|1|IA|C|910

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain IL

30S ribosomal protein S12

Chain JB

Large subunit ribosomal RNA; LSU rRNA