IL_4V4G_669

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V4G|1|BB|G|2757, 4V4G|1|BB|U|2759, 4V4G|1|BB|G|2760, 4V4G|1|BB|A|2761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_669 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.4928

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4G|1|BB|U|2615
4V4G|1|BB|U|2616
4V4G|1|BB|G|2617
4V4G|1|BB|A|2618
4V4G|1|BB|G|2619
*
4V4G|1|BB|C|2754
4V4G|1|BB|A|2755
4V4G|1|BB|A|2756
4V4G|1|BB|G|2757
4V4G|1|BB|A|2758
4V4G|1|BB|U|2759
4V4G|1|BB|G|2760
4V4G|1|BB|A|2761
4V4G|1|BB|G|2762

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BK

50S ribosomal protein L13