IL_4V4G_676

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V4G|1|CA|A|532, 4V4G|1|CA|U|534, 4V4G|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_676 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.4131

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V4G|1|CA|G|515
4V4G|1|CA|U|516
4V4G|1|CA|G|517
4V4G|1|CA|C|518
4V4G|1|CA|C|519
4V4G|1|CA|A|520
4V4G|1|CA|G|521
*
4V4G|1|CA|C|528
4V4G|1|CA|G|529
4V4G|1|CA|G|530
4V4G|1|CA|U|531
4V4G|1|CA|A|532
4V4G|1|CA|A|533
4V4G|1|CA|U|534
4V4G|1|CA|A|535
4V4G|1|CA|C|536

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CL

30S ribosomal protein S12

Chain Ca

protein Y