IL_4V4G_735

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_735 not in the Motif Atlas

Homologous match to IL_4LFB_061

Geometric discrepancy: 0.4382

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V4G|1|EA|C|1424
4V4G|1|EA|U|1425
4V4G|1|EA|C|1426
*
4V4G|1|EA|G|1474
4V4G|1|EA|G|1475
4V4G|1|EA|G|1476

Current chains

Chain EA

16S ribosomal RNA

Nearby chains

Chain FB

Large subunit ribosomal RNA; LSU rRNA