IL_4V4G_784
3D structure
- PDB id
- 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 11.5 Å
Loop
- Sequence
- CAAUGAUAC*GAAAAGUCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4G_784 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.4653
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V4G|1|HA|C|73
4V4G|1|HA|A|74
4V4G|1|HA|A|75
4V4G|1|HA|U|76
4V4G|1|HA|G|77
4V4G|1|HA|A|78
4V4G|1|HA|U|79
4V4G|1|HA|A|80
4V4G|1|HA|C|81
*
4V4G|1|HA|G|100
4V4G|1|HA|A|101
4V4G|1|HA|A|102
4V4G|1|HA|A|103
4V4G|1|HA|A|104
4V4G|1|HA|G|105
4V4G|1|HA|U|106
4V4G|1|HA|C|107
4V4G|1|HA|G|108
Current chains
- Chain HA
- 5S RIBOSOMAL RNA
Nearby chains
- Chain HB
- Large subunit ribosomal RNA; LSU rRNA
- Chain HN
- 50S ribosomal protein L16
- Chain HW
- general stress protein Ctc
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