3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
4V4G|1|IA|C|934, 4V4G|1|IA|U|1381
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4G_817 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.5362
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4V4G|1|IA|G|933
4V4G|1|IA|C|934
4V4G|1|IA|A|935
*
4V4G|1|IA|U|1380
4V4G|1|IA|U|1381
4V4G|1|IA|C|1382
4V4G|1|IA|C|1383
4V4G|1|IA|C|1384

Current chains

Chain IA
16S ribosomal RNA

Nearby chains

Chain IG
30S ribosomal protein S7
Chain II
30S ribosomal protein S9
Chain Ia
protein Y

Coloring options:


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