IL_4V4G_824

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_824 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.3485

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

4V4G|1|IA|G|1416
4V4G|1|IA|G|1417
4V4G|1|IA|A|1418
4V4G|1|IA|G|1419
*
4V4G|1|IA|U|1481
4V4G|1|IA|G|1482
4V4G|1|IA|A|1483
4V4G|1|IA|C|1484

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain IL

30S ribosomal protein S12

Chain JB

Large subunit ribosomal RNA; LSU rRNA