IL_4V4G_843

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UCAAGUGGAG*CGAAAUGAAG

Length

20 nucleotides

Bulged bases

4V4G|1|JB|A|1845, 4V4G|1|JB|A|1846, 4V4G|1|JB|G|1847, 4V4G|1|JB|G|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_843 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.5832

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V4G|1|JB|U|1843
4V4G|1|JB|C|1844
4V4G|1|JB|A|1845
4V4G|1|JB|A|1846
4V4G|1|JB|G|1847
4V4G|1|JB|U|1848
4V4G|1|JB|G|1849
4V4G|1|JB|G|1850
4V4G|1|JB|A|1851
4V4G|1|JB|G|1852
*
4V4G|1|JB|C|1865
4V4G|1|JB|G|1866
4V4G|1|JB|A|1867
4V4G|1|JB|A|1868
4V4G|1|JB|A|1869
4V4G|1|JB|U|1870
4V4G|1|JB|G|1871
4V4G|1|JB|A|1872
4V4G|1|JB|A|1873
4V4G|1|JB|G|1874

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain J1

50S ribosomal protein L31

Chain J7

50S ribosomal protein L1P