IL_4V4H_012

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V4H|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V4H|1|AA|G|147
4V4H|1|AA|G|148
4V4H|1|AA|A|149
4V4H|1|AA|U|150
4V4H|1|AA|A|151
4V4H|1|AA|A|152
4V4H|1|AA|C|153
*
4V4H|1|AA|G|168
4V4H|1|AA|C|169
4V4H|1|AA|U|170
4V4H|1|AA|A|171
4V4H|1|AA|A|172
4V4H|1|AA|U|173
4V4H|1|AA|A|174
4V4H|1|AA|C|175

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20