IL_4V4H_036
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 4V4H|1|AA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4H_036 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0709
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V4H|1|AA|U|662
4V4H|1|AA|A|663
4V4H|1|AA|G|664
4V4H|1|AA|A|665
4V4H|1|AA|G|666
*
4V4H|1|AA|U|740
4V4H|1|AA|G|741
4V4H|1|AA|G|742
4V4H|1|AA|A|743
Current chains
- Chain AA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain AF
- 30S RIBOSOMAL PROTEIN S6
- Chain AO
- 30S RIBOSOMAL PROTEIN S15
- Chain AR
- 30S RIBOSOMAL PROTEIN S18
- Chain AU
- 30S RIBOSOMAL PROTEIN S21
Coloring options: