IL_4V4H_081

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_081 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V4H|1|BB|C|239
4V4H|1|BB|C|240
4V4H|1|BB|A|241
4V4H|1|BB|G|242
4V4H|1|BB|U|243
4V4H|1|BB|A|244
4V4H|1|BB|G|245
*
4V4H|1|BB|C|253
4V4H|1|BB|G|254
4V4H|1|BB|A|255
4V4H|1|BB|A|256
4V4H|1|BB|C|257
4V4H|1|BB|G|258

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L35

Chain BL

50S RIBOSOMAL PROTEIN L15