IL_4V4H_095
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4V4H|1|BB|G|776, 4V4H|1|BB|A|788, 4V4H|1|BB|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4H_095 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.0946
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4H|1|BB|G|775
4V4H|1|BB|G|776
4V4H|1|BB|G|777
*
4V4H|1|BB|C|787
4V4H|1|BB|A|788
4V4H|1|BB|A|789
4V4H|1|BB|U|790
4V4H|1|BB|C|791
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B2
- 50S RIBOSOMAL PROTEIN L34
- Chain BC
- 50S RIBOSOMAL PROTEIN L2
- Chain BE
- 50S RIBOSOMAL PROTEIN L4
- Chain BS
- 50S RIBOSOMAL PROTEIN L22
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