IL_4V4H_174
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4H_174 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0832
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4H|1|BB|G|2737
4V4H|1|BB|A|2738
4V4H|1|BB|U|2739
4V4H|1|BB|A|2740
4V4H|1|BB|A|2741
4V4H|1|BB|G|2742
*
4V4H|1|BB|C|2762
4V4H|1|BB|G|2763
4V4H|1|BB|A|2764
4V4H|1|BB|A|2765
4V4H|1|BB|A|2766
4V4H|1|BB|C|2767
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B4
- 50S RIBOSOMAL PROTEIN L36
- Chain BG
- 50S RIBOSOMAL PROTEIN L6
- Chain BJ
- 50S RIBOSOMAL PROTEIN L13
Coloring options: