IL_4V4H_219

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_219 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0725

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V4H|1|CA|G|887
4V4H|1|CA|G|888
4V4H|1|CA|A|889
4V4H|1|CA|G|890
4V4H|1|CA|U|891
4V4H|1|CA|A|892
4V4H|1|CA|C|893
4V4H|1|CA|G|894
*
4V4H|1|CA|U|905
4V4H|1|CA|A|906
4V4H|1|CA|A|907
4V4H|1|CA|A|908
4V4H|1|CA|A|909
4V4H|1|CA|C|910

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12