IL_4V4H_238

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V4H|1|CA|C|1400, 4V4H|1|CA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_238 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V4H|1|CA|C|1399
4V4H|1|CA|C|1400
4V4H|1|CA|G|1401
*
4V4H|1|CA|C|1501
4V4H|1|CA|A|1502
4V4H|1|CA|A|1503
4V4H|1|CA|G|1504

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains