IL_4V4H_267

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V4H|1|DB|G|801, 4V4H|1|DB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_267 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0765

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4H|1|DB|G|674
4V4H|1|DB|A|675
4V4H|1|DB|A|676
4V4H|1|DB|A|677
4V4H|1|DB|C|678
*
4V4H|1|DB|G|799
4V4H|1|DB|A|800
4V4H|1|DB|G|801
4V4H|1|DB|A|802
4V4H|1|DB|U|803
4V4H|1|DB|A|804
4V4H|1|DB|G|805
4V4H|1|DB|C|806

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L4

Chain DL

50S RIBOSOMAL PROTEIN L15