IL_4V4H_272

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V4H|1|DB|G|776, 4V4H|1|DB|A|788, 4V4H|1|DB|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_272 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0952

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V4H|1|DB|G|775
4V4H|1|DB|G|776
4V4H|1|DB|G|777
*
4V4H|1|DB|C|787
4V4H|1|DB|A|788
4V4H|1|DB|A|789
4V4H|1|DB|U|790
4V4H|1|DB|C|791

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D2

50S RIBOSOMAL PROTEIN L34

Chain DC

50S RIBOSOMAL PROTEIN L2

Chain DS

50S RIBOSOMAL PROTEIN L22