IL_4V4H_310

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_310 not in the Motif Atlas

Homologous match to IL_5J7L_305

Geometric discrepancy: 0.1029

The information below is about IL_5J7L_305

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_67095.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V4H|1|DB|G|1663
4V4H|1|DB|A|1664
4V4H|1|DB|A|1665
*
4V4H|1|DB|U|1995
4V4H|1|DB|C|1996
4V4H|1|DB|C|1997

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L3

Chain DK

50S RIBOSOMAL PROTEIN L14

Chain DP

50S RIBOSOMAL PROTEIN L19