RNA 3D Hub //

Motif IL_67095.2 Version IL_67095.2 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_9DFE_0559DFE0.699011A LSU rRNAU1433A1434G1435*C1557A1558G1560cWWtWWcWW
2 IL_9DFE_0649DFE0.098001A LSU rRNAC1663A1664A1665*U1995C1996G1997cWWtWWcWW
3 IL_5J7L_3055J7L0.09120Isolated tWW turnDA LSU rRNAG1663A1664A1665*U1995C1996C1997cWWtWWcWW
4 IL_7A0S_0607A0S0.08960Isolated tWW turnX LSU rRNAU1680A1681A1682*U1978C1979A1980cWWtWWcWW
5 IL_4WF9_0634WF90.00000Isolated tWW turnX LSU rRNAU1707A1708A1709*U2022C2023A2024cWWtWWcWW
6 IL_8CRE_0808CRE0.085701 LSU rRNAA1891A1892G1893*C2316C2317U2318cWWtWWcWW
7 IL_8P9A_3038P9A0.09650AR LSU rRNAA1895A1896G1897*C2338C2339U2340cWWtWWcWW
8 IL_4V9F_0604V9F0.12240Isolated tWW turn0 LSU rRNAU1741A1742G1743*C2036C2037A2038cWWtWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAA*UCA2
AAG*CCU2
UAG*CAGG1
CAA*UCG1
GAA*UCC1
UAG*CCA1
Non-Watson-Crick part of the motif
SequenceCounts
A*C7
A*AG1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated tWW turn (4)
  • (4)
    • Basepair signature
    cWW-tWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.22 | Max 0.70
    Help

    Coloring options:

    IL_9DFE_055:IL_9DFE_055 = 0IL_9DFE_055:IL_9DFE_064 = 0.6352IL_9DFE_055:IL_5J7L_305 = 0.6508IL_9DFE_055:IL_7A0S_060 = 0.6489IL_9DFE_055:IL_4WF9_063 = 0.699IL_9DFE_055:IL_8CRE_080 = 0.7IL_9DFE_055:IL_8P9A_303 = 0.6966IL_9DFE_055:IL_4V9F_060 = 0.6938IL_9DFE_064:IL_9DFE_055 = 0.6352IL_9DFE_064:IL_9DFE_064 = 0IL_9DFE_064:IL_5J7L_305 = 0.0897IL_9DFE_064:IL_7A0S_060 = 0.1001IL_9DFE_064:IL_4WF9_063 = 0.098IL_9DFE_064:IL_8CRE_080 = 0.1149IL_9DFE_064:IL_8P9A_303 = 0.1116IL_9DFE_064:IL_4V9F_060 = 0.1378IL_5J7L_305:IL_9DFE_055 = 0.6508IL_5J7L_305:IL_9DFE_064 = 0.0897IL_5J7L_305:IL_5J7L_305 = 0IL_5J7L_305:IL_7A0S_060 = 0.0925IL_5J7L_305:IL_4WF9_063 = 0.0912IL_5J7L_305:IL_8CRE_080 = 0.1156IL_5J7L_305:IL_8P9A_303 = 0.1267IL_5J7L_305:IL_4V9F_060 = 0.1382IL_7A0S_060:IL_9DFE_055 = 0.6489IL_7A0S_060:IL_9DFE_064 = 0.1001IL_7A0S_060:IL_5J7L_305 = 0.0925IL_7A0S_060:IL_7A0S_060 = 0IL_7A0S_060:IL_4WF9_063 = 0.0896IL_7A0S_060:IL_8CRE_080 = 0.1002IL_7A0S_060:IL_8P9A_303 = 0.1032IL_7A0S_060:IL_4V9F_060 = 0.1483IL_4WF9_063:IL_9DFE_055 = 0.699IL_4WF9_063:IL_9DFE_064 = 0.098IL_4WF9_063:IL_5J7L_305 = 0.0912IL_4WF9_063:IL_7A0S_060 = 0.0896IL_4WF9_063:IL_4WF9_063 = 0IL_4WF9_063:IL_8CRE_080 = 0.0857IL_4WF9_063:IL_8P9A_303 = 0.0965IL_4WF9_063:IL_4V9F_060 = 0.1224IL_8CRE_080:IL_9DFE_055 = 0.7IL_8CRE_080:IL_9DFE_064 = 0.1149IL_8CRE_080:IL_5J7L_305 = 0.1156IL_8CRE_080:IL_7A0S_060 = 0.1002IL_8CRE_080:IL_4WF9_063 = 0.0857IL_8CRE_080:IL_8CRE_080 = 0IL_8CRE_080:IL_8P9A_303 = 0.0635IL_8CRE_080:IL_4V9F_060 = 0.1229IL_8P9A_303:IL_9DFE_055 = 0.6966IL_8P9A_303:IL_9DFE_064 = 0.1116IL_8P9A_303:IL_5J7L_305 = 0.1267IL_8P9A_303:IL_7A0S_060 = 0.1032IL_8P9A_303:IL_4WF9_063 = 0.0965IL_8P9A_303:IL_8CRE_080 = 0.0635IL_8P9A_303:IL_8P9A_303 = 0IL_8P9A_303:IL_4V9F_060 = 0.0993IL_4V9F_060:IL_9DFE_055 = 0.6938IL_4V9F_060:IL_9DFE_064 = 0.1378IL_4V9F_060:IL_5J7L_305 = 0.1382IL_4V9F_060:IL_7A0S_060 = 0.1483IL_4V9F_060:IL_4WF9_063 = 0.1224IL_4V9F_060:IL_8CRE_080 = 0.1229IL_4V9F_060:IL_8P9A_303 = 0.0993IL_4V9F_060:IL_4V9F_060 = 0IL_9DFE_055IL_9DFE_064IL_5J7L_305IL_7A0S_060IL_4WF9_063IL_8CRE_080IL_8P9A_303IL_4V9F_060Discrepancy0.000.100.200.300.400.500.600.70
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