IL_4V4I_047

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GU*AGU

Length

5 nucleotides

Bulged bases

4V4I|1|w|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_047 not in the Motif Atlas

Geometric match to IL_8I3Z_004

Geometric discrepancy: 0.3819

The information below is about IL_8I3Z_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V4I|1|w|G|1197
4V4I|1|w|U|1198
*
4V4I|1|w|A|1247
4V4I|1|w|G|1248
4V4I|1|w|U|1249

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20