IL_4V4I_122

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CCCC*GG

Length

6 nucleotides

Bulged bases

4V4I|1|y|C|136|||A, 4V4I|1|y|C|136|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_122 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.3432

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V4I|1|y|C|136
4V4I|1|y|C|136|||A
4V4I|1|y|C|136|||B
4V4I|1|y|C|137
*
4V4I|1|y|G|226
4V4I|1|y|G|227

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain n

30S ribosomal protein S13

Chain q

30S ribosomal protein S16

Chain v

30S ribosomal protein Thx