3D structure

PDB id
4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
GCAAU*AC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4I_129 not in the Motif Atlas
Homologous match to IL_6CZR_127
Geometric discrepancy: 0.2354
The information below is about IL_6CZR_127
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.2
Basepair signature
cWW-cSH-cWS-tWH-cWW
Number of instances in this motif group
5

Unit IDs

4V4I|1|y|G|371
4V4I|1|y|C|372
4V4I|1|y|A|373
4V4I|1|y|A|374
4V4I|1|y|U|375
*
4V4I|1|y|A|389
4V4I|1|y|C|390

Current chains

Chain y
16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain q
30S ribosomal protein S16

Coloring options:


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