IL_4V4I_142

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_142 not in the Motif Atlas

Homologous match to IL_6CZR_140

Geometric discrepancy: 0.3409

The information below is about IL_6CZR_140

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.5

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4V4I|1|y|G|657
4V4I|1|y|G|658
*
4V4I|1|y|C|747
4V4I|1|y|C|748
4V4I|1|y|C|749

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain p

30S ribosomal protein S15