IL_4V4I_172

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_172 not in the Motif Atlas

Geometric match to IL_4KNQ_004

Geometric discrepancy: 0.1887

The information below is about IL_4KNQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V4I|1|y|G|1435
4V4I|1|y|U|1436
4V4I|1|y|C|1437
*
4V4I|1|y|G|1464
4V4I|1|y|C|1465
4V4I|1|y|C|1466

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain u

30S ribosomal protein S20

Chain w

Large subunit ribosomal RNA; LSU rRNA