IL_4V4I_181

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_181 not in the Motif Atlas

Homologous match to IL_9DFE_059

Geometric discrepancy: 0.4009

The information below is about IL_9DFE_059

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V4I|1|w|A|1469
4V4I|1|w|G|1470
4V4I|1|w|A|1471
4V4I|1|w|A|1472
4V4I|1|w|G|1473
*
4V4I|1|w|U|1520
4V4I|1|w|G|1521
4V4I|1|w|G|1522
4V4I|1|w|U|1523

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains