IL_4V4I_185

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

4V4I|1|w|G|1899, 4V4I|1|w|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_185 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.473

The information below is about IL_5J7L_315

Detailed Annotation

Major groove outside cWW, minor groove, intercalation pocket

Broad Annotation

Major groove outside cWW, minor groove, intercalation pocket

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V4I|1|w|U|1841
4V4I|1|w|G|1842
*
4V4I|1|w|U|1898
4V4I|1|w|G|1899
4V4I|1|w|A|1900
4V4I|1|w|A|1901

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2