IL_4V4I_195

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

4V4I|1|y|A|1492, 4V4I|1|y|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_195 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.4109

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4V4I|1|y|5MC|1407
4V4I|1|y|A|1408
4V4I|1|y|C|1409
*
4V4I|1|y|G|1491
4V4I|1|y|A|1492
4V4I|1|y|A|1493
4V4I|1|y|G|1494

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain 1

MRNA

Chain m

30S ribosomal protein S12

Chain w

Large subunit ribosomal RNA; LSU rRNA