IL_4V4J_001

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_001 not in the Motif Atlas

Geometric match to IL_5TBW_015

Geometric discrepancy: 0.2035

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V4J|1|w|G|24
4V4J|1|w|U|25
4V4J|1|w|G|26
4V4J|1|w|G|27
4V4J|1|w|A|28
4V4J|1|w|U|29
4V4J|1|w|G|30
*
4V4J|1|w|C|510
4V4J|1|w|U|511
4V4J|1|w|G|512
4V4J|1|w|A|513
4V4J|1|w|A|514
4V4J|1|w|A|515
4V4J|1|w|C|516

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32