IL_4V4J_003

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_003 not in the Motif Atlas

Homologous match to IL_5J7L_247

Geometric discrepancy: 0.3796

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V4J|1|w|G|43
4V4J|1|w|A|44
*
4V4J|1|w|U|434
4V4J|1|w|C|435
4V4J|1|w|C|436

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains