IL_4V4J_006
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_006 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.2121
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V4J|1|w|G|188
4V4J|1|w|G|189
4V4J|1|w|A|190
4V4J|1|w|A|191
4V4J|1|w|C|192
4V4J|1|w|U|193
4V4J|1|w|G|194
*
4V4J|1|w|C|201
4V4J|1|w|U|202
4V4J|1|w|C|203
4V4J|1|w|A|204
4V4J|1|w|G|205
4V4J|1|w|U|206
4V4J|1|w|A|207
4V4J|1|w|C|208
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain V
- LSU ribosomal protein L28P
- Chain Z
- 50S ribosomal protein L34
- Chain a
- 50S ribosomal protein L35
Coloring options: