3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
4V4J|1|w|A|501, 4V4J|1|w|U|504, 4V4J|1|w|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4J_014 not in the Motif Atlas
Geometric match to IL_7A0S_009
Geometric discrepancy: 0.2299
The information below is about IL_7A0S_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_44923.1
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
9

Unit IDs

4V4J|1|w|G|481
4V4J|1|w|A|482
4V4J|1|w|A|483
4V4J|1|w|C|484
*
4V4J|1|w|G|496
4V4J|1|w|A|497
4V4J|1|w|G|498
4V4J|1|w|U|499
4V4J|1|w|G|500
4V4J|1|w|A|501
4V4J|1|w|A|502
4V4J|1|w|A|503
4V4J|1|w|U|504
4V4J|1|w|A|505
4V4J|1|w|G|506
4V4J|1|w|A|507
4V4J|1|w|G|508
4V4J|1|w|C|509

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain Q
50S ribosomal protein L22
Chain S
50S ribosomal protein L24

Coloring options:


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